since he is mounting the s/c on the intake manifold, he should really using a phenolic plastic (aka hondata intake manifold gasket) as a gasket. this will minimize the heat soak effect from mounting it on the intake manifold. it has been proven on a N/A honda you can gain 8hp from a gasket. Imagine the amount of heat that s/c creates and now mounting it on the intake manifold. trust me, take my advice, your going to need it for efficiency sake.
tuning is going to be hard? I keep hearing this, and I have only heard one person say what should be done. and it's easy people. you have a valve that disengages the s/c when the turbo hits 1 psi or whatever you designate. this is what was done on the twin-charged svt truck that i worked on. i designed the valve myself for god sakes. the transition is smooth having power from just after dead idle all the way to 6800 on that svt. while a compound twin-charge setup works, it is not efficient and puts a lot of strain on the supercharger. you must make the setup sequential like a mkiv. the #1 turbo is your supercharger and then the #2 turbo is your actual turbo that you have designated to take you all the way to redline, cause we all know why. the aem unit is more than capable of handling this transition.