I completely eliminated the OEM ignitor(because it's a garbage design) and I made my own coil ignitors inside the megasquirt case, works amazing.
My setup:
-7M-GTE from 91-92 Supra swapped into a 1977 Celica GT (RA29)
-MS2 V3 board, not the DIY PNP, I built this one myself.
-OEM coilpacks driven by 3 transistor ignitor circuits in the MS case, waste spark like factory.
-Working IAC valve, changed from unipolar to bipolar to make it function properly.
560cc EVO IX injectors, batch fired, wired directly to megasquirt using PWM to control. no added resistors even though they are LOW Z
-12-1 (24-2) CPS mod, works great. worked as 24-1 also
-57 trim CT
-Pump 93oct
I just did a quick n' dirty tune of the base VE map, and took a conservative guess at what the timing map might look like, never actually put any dyno work into tuning the timing... well not yet anyways, I have to wait for next spring.
After getting it all driveable, I went to the track and ran a 11.51 @ 122mph, and I never used the 2-step, so I should have a lot left in it, especially after I set the timing and up the boost some more!