If you are using ARP rod bolts you need to have the rods resized no matter what, If it was knocking the rods need to be resized for a undersized bearing along with the crank shaft, You are using a different set of rods and ARP rod bolts is what I think you said, they still need to be resized if they are being used with ARP bolts, wether that set of rods spun a bearing or not.
As far as the crank shaft goes if it was knocking it needs to be resized/ground/polished for an undersized bearing. I guarantee if it was knocking the crankshaft journal clearances are no longer in spec.
Just a heads up, Hope your not planning on just replacing the bearings and hoping its good