Yep, throttle body is different on the 89+
From what I've seen, the intake manifolds are the same.
Exhaust manifolds improved on the newer ones, they left a "rib" down the runners to try and stop cracking of the manifold. (Works to some extent, but they still will crack there if the manifold is not allowed to float on the gasket as it's designed to do. Make sure your bolt holes are open enough to let the manifold expand and contract as it's heated and cooled. This becomes a problem as people modify the head for larger SAE head studs, you also have to enlarge the exhaust manifold, or you can crack them.)
Ok, back on topic, the intake's are the same I think. TB's are different.