No doubt the ECU plays a part in it, but I think that's a supporting mod (regarding response), that will allow you to reap the full benefit of the parts and setup you already have.
I'm honestly not sure how important exhaust is to throttle response, especially with a turbo, but I'm sure it does matter.
How many 7M-GTEs have you seen with ITBs? I'm pretty sure indv. throttles would have a drastic effect on response, but I haven't heard of anybody yet with that setup on the the GTE...
It'd be very hard for us to make our engine as responsive as that 4 rotor wankel; much much less moving mass than we could reasonably hope to achieve with a straight six. Plus, its naturally aspirated.