I sincerely recommend that anyone considering the Lex/550 upgrade read this article by Reg Riemer, the guy who originally designed this upgrade. It details the reasons he chose to do things they way he did, the research and math that went into it, and the purpose for each component of this upgrade.
You will find that the Lex/550 setup is a well designed upgrade, and not some grouping of parts that was just thrown together independent of each other in an attempt to get more power.
The article is very educational, and it's important to know exactly why you're doing certain things to your car.
http://suprasonic.org/lexusriemer/lexusnotes.html