The stock twins are rather small, versus aftermarket twins being larger, typically not sharing the same down pipe until further down the exhaust stream, two sets of hot-side intercooler pipes to deal with and plumb, versus a stock cast y-pipe setup that a 1 or 2J has, oil line rounting, aftermarket wastegate setup (you know you're going to push them
), need I keep going?
That's just a few of the reason why many ditch the twin idea and go with a more simple, more efficient single setup.
As far as block prep goes, the stock block will handle what you can throw at it, just make sure you prep it well. A forged piston, specified in stock size, is typically overbored slightly to allow for proper ring seal after the bore is performed to the block. Research the brands of pistons yourself to find out the actuall specs of them.
The head gask prep is where it's at if you want to keep something that powerful from leaking into other cylinders and the water jackets.