Are you sure no one else is running one vacuum port???? BTW I am for all other functions besides the brake booster and it is awesome. There is no problems, easier to route lines, easier to hook up aftermarket parts that need vac./boost. Plus it is easy to check for vacuum leaks. But I also have the brake booster running off of its own 1/4 npt port on the rear of the manifold. The extra ports Im not using yet just get capped off with no problem.
Also on the OEM manifold setup there is only 3 vacuum ports. One main one on the front of the manifold witch supplies the J shape vacuum tube, one small one on the rear for the heater valve and cruise control, and one for the brake booster.
Edit: here is a pic of the one I made. It is just zipped tied to the brake booster.