what you need to do is mount the inter cooler and route the piping from there. you might need to get some new piping. stock ic is in and out on the same side this ic is in on one side and out on the other so you need to do some mods to make it fit. its not just going to be o i just bought a hks inter cooler and it will fit, wrong you need to modify your ic piping for it to fit.
p.s. in your pic you need to flip your ic and mount it. the 90* outlet needs to be pointing towards the ground.