In general theory, if you are building a motor, you can tailor the bore v/s the stroke for the vehicle the engine is going to be run in.
A "Square" engine is one where the bore and stroke are about the same. (Or are the same.) It generally results in an engine that is quite well rounded, depending on the displacement of the engine.
The 7M is a stroker motor from the factory. It has a longer stroke than bore, and thus was/is a good engine for making tourqe, but is somewhat limited in how high the engine speed can go without causing terminal damage to something. (Rods)
Destroked, and thus lower displacement 7M's have been built that made serious power at high rpm. (HKS did it on the 80's MK3 based drag race car.. 9 second or better IIRC on 2.8L and custom everything.)
The JZ engines are also shorter stroke, and more "square" designs than the 7M. They allowed for a shorter stroke by having a larger bore to keep the displacement ability of the design capable of 2.5 or 3.0L and still have a motor that can turn quite fast with less stress on the rods.
There are some long stroke engines out there making serious power at very high speeds, but they also tend to have very high quality internal parts. (Forged, Ti and other expensive yet strong moving stuff for the crank, rods and pistons.)
Valve weight is an issue too. Most larger valves are going to hollow stems, and other tricks to keep the weight down. (Lighter materials too.)
Ok, so all things being equal here is a good rule of thumb.
Same engine design. I6 in this case, and 3.0L for discussion.
Generally, the one with the large bore, and short stroke would make more high RPM power and have less off idle tourqe.
The one with the longer stroke, and smaller bore would make more low and midrange tourqe, and possibly less power on top due to reduced engine speed.
The way around this, is to build a long stroke, big bore, and higher displacement engine with quality parts that can handle the engine speed, and yet provide the best of both worlds. (IE: My stroker 7MGTE..
) LOL
In the V8 world, look at the LS7 engine. It uses very high tech, and expensive parts to maintain the best of both designs, but now the new LS9 Supercharged engine has gone back to the displacement and design of the "base" engine with thicker cyc. bore walls, and less stroke to help keep this motor together under the stress of force feeding it.
BTW, turbo size, or SC ratio all play into how the tourqe curve is going to look on any motor, and with variable valve control, many engines that would normally be "gutless" down low, or on top can now have very broad power bands because the valve event timing is completely controlled by a computer. (Heck, some do not need throttle bodies, they are controlling it all with valve control.. You step on the "gas" and the computer decides to now start opening the valves more to flow more air v/s a "gate" like Throttle body that allows more air into the intake manifold.. ) As you might expect, this makes throttle response very fast, and reduces some other losses, so the fuel economy and power is further improved.. (BMW calls it "Double Vanos" IIRC.)
And that is totally another subject!