I would just extend them while you are in there and do everything right. Previous owner of my car cut a new hole in the firewall where you are describing and ran the harness behind the dash in what seems like the shortest way possible, the ECU hardly sits in the glove box at all, I definitely can't secure it anywhere normal. Also the harness ended up rubbing the firewall where some insulation was missing on the metal edge and shorted out my AM2 fuse repeatedly, it was great. Also if you don't seal the hole extremely well, you will smell all sorts of great engine smells all the time.
On the plus side, I can hear my engine better than I could without the hole directly in front of my crotch in the firewall piping in noise.
I definitely wouldn't do it to a DD, IMO. I don't really care because my car only has to do one thing well, go real real fast.