It's definetly safe. Your freeing up the exhaust and helping the turbo breath alot better that's why the boost increases, but it won't damage anything with the natural increase in power. The fuel cut is there to really help you, when it senses you might be close to damaging anything it stops before you can. It's toyota's way of protecting the engine from people upping the boost without proper fuel. You probably will be under fuel cut with those mods, If you got a Manual boost controller and upped the boost some more you might hit it, but again it's protecting the engine so you don't run lean, just back the boost off alittle and you'll be set.