If your still looking for the VSV's here is where they are located:
As for what to remove on the EGR system. Remove what is shown in this next image minus the DP Diaphragm, VTV, and air filter. As for the hole left if you decide to remove the BVSV, that is where I placed my mechanical temp sending unit. It's not perfect as it only reads accurate after the thermostat opens up.
If you remove the Charcoal Canister you need to either reroute the gas tank vent out side the engine bay or plug the pipe and get a vented gas cap.
As for what to block off, the two circled areas show the places the block off plates go.
If you need EGR block off plates, you can get some from JBLMK3. One of the site sponsors. Follow his link from the main page.