Everything works fantastic, until it fails or breaks.
If I had a dollar for every thread about a Supra equipped with e-fans having cooling issues, I'd have a lot of dollars.
Not everyone has bad luck with e-fans, or even a large majority, but I've seen more than enough problematic threads about them to recommend them to anybody over the stock hydraulic or mechanical fans the Supras can with from the factory. They all work great, even for high-hp applications, so why change them?
But to stay more on topic, the biggest problem with the hydraulic fan is, if you don't have all the parts, they can be hard to track down. Just depends on who has what laying around at the time that they can sell you. 2J pumps and mechanical fans can be bought all day long though if needed.