-Simply a boost leak.
-If stock exhaust, your boost pressure will fall badly when it comes time to shift.
And finally, Did you buy your Profec used?
Electronic boost controllers are GREAT to have...when they work (good condition). I'm not sure of the Profec's functionality, but your Stepper motor is probably fubared. My HKS EVC would do this randomly sometimes...
At first, I thought it was my turbo acting up, so to test it for sure, I unplugged my WG>Turbo hose and went to boost and sure enough, boosted to 17psi w/ fuel cut...so, it was definately my Stepper motor.
Just a few suggestions...Hopefully you figure it out.
Jeff