So I found another cut wire while rebuilding my GTE. This one is weird however. The first few inches of the wire are a different color (red/black) but if you follow the wire down you could see the original color of the harness wire was blue/yellow. Once again I have no idea what the previous owner was doing with this car. I have included a picture of where I believe this wire connects to since that blue plug looks tampered with as well. That connector is located on the thermostat cover.